Did you complete the reprogramming procedure for the new remote control? Also, the super control (wall mount unit in the garage) can have problems after several years of use in the garage. This can usually be fixed by disassembly of the unit and cleaning the contacts with alcohol. Also, if the problem only occurs when the garage door is going up you may have a broken spring or a spring that is out of adjustment. With the door down, release the RED handle and see if you can raise the door, if not the springs need to be checked. If you can raise the door, there are 2 adjustments on the MVP motor operator that contact safety features for raise and lower, and the raise one may be out of adjustment.
Hope this helps.
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Pennsylvania, for 60+ years, most recently, Allentown, now TV. 
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